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Original Article| Volume 24, ISSUE 1, P35-43, February 2023

Associations between the Gut Microbiome and Migraines in Children Aged 7-18 Years: An Analysis of the American Gut Project Cohort

      Abstract

      Background

      The gut microbiome seems to play a role in migraines through increasing intestinal epithelial permeability and pro-inflammatory processes. The associations between the gut microbiome and migraines are uncertain in children.

      Aim

      The purpose of this quantitative study was to examine the associations between the gut microbiome and migraines in children aged 7-18 years from the American Gut Project (AGP).

      Method

      A cohort of children aged 7-18 years from the AGP was analyzed. 16S rRNA V4 gene sequences for the gut microbiome, migraines, and demographics were obtained from the AGP Public Repository. After quality control of 16S rRNA gene sequences, α-diversity (Shannon, Faith's_PD, and evenness) and β-diversity metrics (Bray-Curtis and weighted-UniFrac distances), taxonomy, and abundance analyses were implemented using QIIME 2.

      Results

      In total, 381 children (341 without migraines; 40 with professional or self-diagnosed migraines) were analyzed with a mean age of 11.5 years. Compared with those without migraines, children with migraines showed lower estimates in Shannon and Faith's_PD (p < .01). Both Bray-Curtis and weighted-UniFrac distances displayed the gut microbial dissimilarities between these two groups (p = .001). Children with migraines had higher abundances in genus of phylum Bacteroidetes (Bacteroides, Parabacteroides, Odoribacter), Actinobacteria (Eggerthella, Varibaculum), Firmicutes (SMB53, Lachnospira, Dorea, Veillonella, Anaerotruncus, Butyricicoccus, Coprobacillus, Eubacterium), and Proteobacteria (Sutterella) than children without migraines.

      Conclusions

      Associations of the gut microbiome diversity and abundances with migraines in children indicated potential biological mechanisms of migraines. Future work needs to confirm our findings in children.
      Migraines are frequently reported in children and adolescents. Migraines exhibit in various forms in children and adolescents based on age and have an estimated overall prevalence of 10% in children and adolescents worldwide (
      • Abu-Arafeh I.
      • Razak S.
      • Sivaraman B.
      • Graham C.
      Prevalence of headache and migraine in children and adolescents: a systematic review of population-based studies.
      ). Pediatric and adolescent migraines exhibit certain symptoms that are distinct from adult migraines (
      • Rothner A.D.
      Migraine variants in children.
      ). Bilateral migraines are found to be more frequent in children and with a reduced duration (
      • Green A.
      • Kabbouche M.
      • Kacperski J.
      • Hershey A.
      • O'Brien H
      Managing migraine headaches in children and adolescents.
      ). Types of variant migraines include infantile colic, cyclic vomiting, and paroxysmal torticollis (
      • Rothner A.D.
      Migraine variants in children.
      ). As a multifactorial health condition, the risk factors of migraines include familial history, environmental factors, and gastrointestinal (GI) disorders (
      • Chen J.
      • Wang Q.
      • Wang A.
      • Lin Z.
      Structural and functional characterization of the gut microbiota in elderly women with migraine.
      ;
      • Rothner A.D.
      Migraine variants in children.
      ). An inappropriate management of the severe health effects of migraines can adversely impact childhood school performance, such as more school absences and missing extracurricular activities, leading to potential mental and physical health complications in adulthood (
      • Arruda M.A.
      • Bigal M.E.
      Migraine and migraine subtypes in preadolescent children: Association with school performance.
      ).
      Generally, pediatric migraines clinically manifest in various ways and are usually age-dependent. Infants under the age of one may experience and show migraine discomfort by “head banging” episodes, whereas toddlers may appear more sickly, experiencing bouts of vomiting and abdominal pain. As children get older, migraines tend to last longer and have more intense symptoms, such as lethargy, phonophobia, swollen nasal passages, dehydration, edema, or diarrhea (
      • Teleanu R.I.
      • Vladacenco O.
      • Teleanu D.M.
      • Epure D.A.
      Treatment of pediatric migraine: A review.
      ). Compared with the adult population, children with migraines experience a wide range of GI symptoms, including abdominal pain, nausea, vomiting, diarrhea, and constipation (
      • Cady R.K.
      • Farmer K.
      • Dexter J.K.
      • Hall J.
      The bowel and migraine: Update on celiac disease and irritable bowel syndrome.
      ;
      • Green A.
      • Kabbouche M.
      • Kacperski J.
      • Hershey A.
      • O'Brien H
      Managing migraine headaches in children and adolescents.
      ). Episodic migraine headaches can have lingering symptoms for up to 72 hours (
      • Youssef P.E.
      • Mack K.J.
      Episodic and chronic migraine in children.
      ). After the headache phase subsides, children may experience an altered physical state, such as elation and pronounced energy, or lethargy and exhaustion (
      • Dooley J.M.
      • Pearlman E.M.
      The clinical spectrum of migraine in children.
      ). In addition, migraines are often associated with psychiatric and neurologic conditions (e.g., depression, anxiety, and seizures) as well as sleep disturbance (
      • Hershey A.D.
      Current approaches to the diagnosis and management of paediatric migraine.
      ;
      • Kim S.
      • Zhang W.
      • Pak V.
      • Aqua J.K.
      • Hertzberg V.S.
      • Spahr C.M.
      • Bai J.
      How stress, discrimination, acculturation and the gut microbiome affect depression, anxiety and sleep among Chinese and Korean immigrants in the USA: a cross-sectional pilot study protocol.
      • Youssef P.E.
      • Mack K.J.
      Episodic and chronic migraine in children.
      ). These associations of migraines with GI symptoms and psychoneurologic conditions in children suggest that the gut microbiome might play a critical role in migraines via the microbiome-gut-brain axis (
      • Arzani M.
      • Jahromi S.R.
      • Ghorbani Z.
      • Vahabizad F.
      • Martelletti P.
      • Ghaemi A.
      • Sacco S.
      • Togha M.
      School of Advanced Studies of the European Headache Foundation (EHF-SAS)
      Gut-brain Axis and migraine headache: A comprehensive review.
      ;
      • Chen J.
      • Wang Q.
      • Wang A.
      • Lin Z.
      Structural and functional characterization of the gut microbiota in elderly women with migraine.
      ;
      • Farooqui T.
      Chapter 15 - Contribution of gut microbiota in the pathogenesis of migraine headache.
      ).
      The human body hosts more than 10 times microbial species than our own cells. More than 90% of these microorganisms colonize in the GI tract (
      • Knight R.
      • Buhler B.
      Follow your gut: the enormous impact of tiny microbes.
      ;
      • Savage D.C.
      Microbial ecology of the gastrointestinal tract.
      ). Numerous advances have been made to describe the critical role of the gut microbiome (i.e., a collection of all genomes of microbes in the GI tract) in human health and disease (
      • Dethlefsen L.
      • McFall-Ngai M.
      • Relman D.A.
      An ecological and evolutionary perspective on human-microbe mutualism and disease.
      ;
      • Knight R.
      • Buhler B.
      Follow your gut: the enormous impact of tiny microbes.
      ;
      • Wilson M.
      Bacteriology of humans: an ecological perspective.
      ). Dysbiosis (i.e., the biological diversity, abundance of bacterial taxa, or combinations of both components) of the gut microbiome can increase human disease susceptibility and impact many aspects of health, including migraine development (
      • Arzani M.
      • Jahromi S.R.
      • Ghorbani Z.
      • Vahabizad F.
      • Martelletti P.
      • Ghaemi A.
      • Sacco S.
      • Togha M.
      School of Advanced Studies of the European Headache Foundation (EHF-SAS)
      Gut-brain Axis and migraine headache: A comprehensive review.
      ;
      • Farooqui T.
      Chapter 15 - Contribution of gut microbiota in the pathogenesis of migraine headache.
      ). Since the microbiome is such an integral part of the body, it is important to understand their effects on human health to elucidate potential targets of treatment and other medical interventions.
      Recent discoveries further highlight the microbiome-gut-brain axis. Specifically, migraines were found correlated with increased levels of nitrate, which is commonly consumed as a food additive or in nitrate-containing medication (
      • Gonzalez A.
      • Hyde E.
      • Sangwan N.
      • Gilbert J.A.
      • Viirre E.
      • Knight R.
      Migraines are correlated with higher levels of nitrate-, nitrite-, and nitric oxide-reducing oral microbes in the American Gut Project Cohort.
      ). Higher levels of nitrate, nitrite, and nitric oxide reductase genes in the oral and gut microbiome were reported in those who experienced migraines than those who did not, alluding to a potential symbiotic relationship between the gut microbiome and migraines (
      • Gonzalez A.
      • Hyde E.
      • Sangwan N.
      • Gilbert J.A.
      • Viirre E.
      • Knight R.
      Migraines are correlated with higher levels of nitrate-, nitrite-, and nitric oxide-reducing oral microbes in the American Gut Project Cohort.
      ). Additionally, an overall reduced diversity of the gut microbiome was reported among patients with migraines (
      • Chen J.
      • Wang Q.
      • Wang A.
      • Lin Z.
      Structural and functional characterization of the gut microbiota in elderly women with migraine.
      ;
      • Hindiyeh N.
      • Aurora S.K.
      What the gut can teach us about migraine.
      ). Furthermore, there were increased concentrations of bacteria associated with negative health effects (e.g., irritable bowel disease, inflammation, and bacteremia) while there were increased concentrations of healthy gut microbes in healthy adults (
      • Chen J.
      • Wang Q.
      • Wang A.
      • Lin Z.
      Structural and functional characterization of the gut microbiota in elderly women with migraine.
      ;
      • Hall A.B.
      • Yassour M.
      • Sauk J.
      • Garner A.
      • Jiang X.
      • Arthur T.
      • Lagoudas G.K.
      • Vatanen T.
      • Fornelos N.
      • Wilson R.
      • Bertha M.
      • Cohen M.
      • Garber J.
      • Khalili H.
      • Gevers D.
      • Ananthakrishnan A.N.
      • Kugathasan S.
      • Lander E.S.
      • Blainey P.
      • Vlamakis H.
      • Xavier R.J.
      • Huttenhower C.
      A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients.
      ;
      • Hansen S.G.
      • Skov M.N.
      • Justesen U.S.
      Two cases of Ruminococcus gnavus bacteremia associated with diverticulitis.
      ). According to the microbiome-gut-brain axis, biologic pathways through which the gut microbiome influences the migraines include: altering gut microbiome composition and the functional metabolome of the gut microbiome; upsetting the balance of “beneficial” and “detrimental” bacteria in the lumen; and activating neuro-immune signaling pathways (
      • Bajic J.E.
      • Johnston I.N.
      • Howarth G.S.
      • Hutchinson M.R.
      From the bottom-up: Chemotherapy and gut-brain axis dysregulation. (2018).
      ). Generally, higher gut microbial diversity is associated with healthier lifestyles and better disease outcomes (
      • Bai J.
      • Hu Y.
      • Bruner D.W.
      Composition of gut microbiota and its association with body mass index and lifestyle factors in a cohort of 7-18 years old children from the American Gut Project.
      ;
      • Manor O.
      • Dai C.L.
      • Kornilov S.A.
      • Smith B.
      • Price N.D.
      • Lovejoy J.C.
      • Gibbons S.M.
      • Magis A.T.
      Health and disease markers correlate with gut microbiome composition across thousands of people.
      ). A previous study observed a greater microbial diversity and abundance of probiotic Coprococcus, Lachnospira, Faecalibacterium genera in participants who had higher levels of physical activities and diet containing more fruits and vegetables (
      • Manor O.
      • Dai C.L.
      • Kornilov S.A.
      • Smith B.
      • Price N.D.
      • Lovejoy J.C.
      • Gibbons S.M.
      • Magis A.T.
      Health and disease markers correlate with gut microbiome composition across thousands of people.
      ). Consistent with these findings, a lower α-diversity, such as an increased proportion of pathogenic bacteria (e.g., Escherichia coli and Bacteroides fragilis), is often associated with negative health outcomes, such as inflammatory bowel diseases, autism, and obesity (
      • Cotillard A.
      • Kennedy S.P.
      • Kong L.C.
      • Prifti E.
      • Pons N.
      • Le Chatelier E.
      • Almeida M.
      • Quinquis B.
      • Levenez F.
      • Galleron N.
      • Gougis S.
      • Rizkalla S.
      • Batto J.M.
      • Renault P.
      • Doré J.
      • Zucker J.D.
      • Clément K.
      • Ehrlich S.D.
      Dietary intervention impact on gut microbial gene richness.
      ;
      • Hakansson A.
      • Molin G.
      Gut microbiota and inflammation.
      ;
      • Kang D.W.
      • Park J.G.
      • Ilhan Z.E.
      • Wallstrom G.
      • Labaer J.
      • Adams J.B.
      • Krajmalnik-Brown R.
      Reduced incidence of Prevotella and other fermenters in intestinal microflora of autistic children.
      ).
      • Tang Y.
      • Liu S.
      • Shu H.
      • Yanagisawa L.
      • Tao F.
      Gut microbiota dysbiosis enhances migraine-like pain via TNFα upregulation.
      has indicated that dysbiotic gut microbiome contributes to migraines due to upregulation of tumor necrosis factor (TNF)-α, resulting in pain from inflammation (
      • Tang Y.
      • Liu S.
      • Shu H.
      • Yanagisawa L.
      • Tao F.
      Gut microbiota dysbiosis enhances migraine-like pain via TNFα upregulation.
      ). Although dysbiosis of the gut microbiome is associated with migraines, exact mechanisms of the gut microbiome involvement in migraines need to be further characterized in children (
      • Tang Y.
      • Liu S.
      • Shu H.
      • Yanagisawa L.
      • Tao F.
      Gut microbiota dysbiosis enhances migraine-like pain via TNFα upregulation.
      ).
      The biologic mechanism of how the gut microbiome impacts the onset of migraines or how migraines can potentially be caused by gut dysbiosis has yet to be elucidated. While there have been studies on the association between migraines and the gut microbiome, only the adult demographic has been researched, despite migraines afflicting 10% of children worldwide. Thus, studying the gut microbiome and its association with migraines in children could help design targeted interventions (e.g., probiotics) (
      • Martami F.
      • Togha M.
      • Seifishahpar M.
      • Ghorbani Z.
      • Ansari H.
      • Karimi T.
      • Jahromi S.R.
      The effects of a multispecies probiotic supplement on inflammatory markers and episodic and chronic migraine characteristics: A randomized double-blind controlled trial.
      ) in preventing and alleviating the migraines. This quantitative study examines the associations between the gut microbiome and migraines in a cohort of children aged 7-18 years from the American Gut Project (AGP) (
      • McDonald D.
      • Hyde E.
      • Debelius J.W.
      • Morton J.T.
      • Gonzalez A.
      • Ackermann G.
      • Aksenov A.A.
      • Behsaz B.
      • Brennan C.
      • Chen Y.
      • Goldasich L.D.
      • Dorrestein P.C.
      • Dunn R.R.
      • Fahimipour A.K.
      • Gaffney J.
      • Gilbert J.A.
      • Gogul G.
      • Green J.L.
      • Hugenholtz P.
      • Humphrey G.
      • Huttenhower C.
      • Jackson M.A.
      • Janssen S.
      • Jeste D.V.
      • Jiang L.
      • Kelley S.T.
      • Knights D.
      • Kosciolek T.
      • Ladau J.
      • Leach J.
      • Marotz C.
      • Meleshko D.
      • Melnik A.V.
      • Metcalf J.L.
      • Mohimani H.
      • Montassier E.
      • Navas-Molina J.
      • Nguyen T.T.
      • Peddada S.
      • Pevzner P.
      • Pollard K.S.
      • Rahnavard G.
      • Robbins-Pianka A.
      • Sangwan N.
      • Shorenstein J.
      • Smarr L.
      • Song S.J.
      • Spector T.
      • Swafford A.D.
      • Thackray V.G.
      • Thompson L.R.
      • Tripathi A.
      • Vázquez-Baeza Y.
      • Vrbanac A.
      • Wischmeyer P.
      • Wolfe E.
      • Zhu Q.
      • Knight R.
      • Greene C.S.
      • Mann A.E.
      • Amir A.
      • Frazier A.
      • Martino C.
      • Lebrilla C.
      • Lozupone C.
      • Lewis C.M.
      • Raison C.
      • Zhang C.
      • Lauber C.L.
      • Warinner C.
      • Lowry C.A.
      • Callewaert C.
      • Bloss C.
      • Willner D.
      • Galzerani D.D.
      • Gonzalez D.J.
      • Mills D.A.
      • Chopra D.
      • Gevers D.
      • Berg-Lyons D.
      • Sears D.D.
      • Wendel D.
      • Lovelace E.
      • Pierce E.
      • TerAvest E.
      • Bolyen E.
      • Bushman F.D.
      • Wu G.D.
      • Church G.M.
      • Saxe G.
      • Holscher H.D.
      • Ugrina I.
      • German J.B.
      • Caporaso J.G.
      • Wozniak J.M.
      • Kerr J.
      • Ravel J.
      • Lewis J.D.
      • Suchodolski J.S.
      • Jansson J.K.
      • Hampton-Marcell J.T.
      • Bobe J.
      • Raes J.
      • Chase J.H.
      • Eisen J.A.
      • Monk J.
      • Clemente J.C.
      • Petrosino J.
      • Goodrich J.
      • Gauglitz J.
      • Jacobs J.
      • Zengler K.
      • Swanson K.S.
      • Lewis K.
      • Mayer K.
      • Bittinger K.
      • Dillon L.
      • Zaramela L.S.
      • Schriml L.M.
      • Dominguez-Bello M.G.
      • Jankowska M.M.
      • Blaser M.
      • Pirrung M.
      • Minson M.
      • Kurisu M.
      • Ajami N.
      • Gottel N.R.
      • Chia N.
      • Fierer N.
      • White O.
      • Cani P.D.
      • Gajer P.
      • Strandwitz P.
      • Kashyap P.
      • Dutton R.
      • Park R.S.
      • Xavier R.J.
      • Mills R.H.
      • Krajmalnik-Brown R.
      • Ley R.
      • Owens S.M.
      • Klemmer S.
      • Matamoros S.
      • Mirarab S.
      • Moorman S.
      • Holmes S.
      • Schwartz T.
      • Eshoo-Anton T.W.
      • Vigers T.
      • Pandey V.
      • Treuren W.V.
      • Fang X.
      • Xu Z.Z.
      • Jarmusch A.
      • Geier J.
      • Reeve N.
      • Silva R.
      • Kopylova E.
      • Nguyen D.
      • Sanders K.
      • Benitez R.A.S.
      • Heale A.C.
      • Abramson M.
      • Waldispühl J.
      • Butyaev A.
      • Drogaris C.
      • Nazarova E.
      • Ball M.
      • Gunderson B.
      American gut: An open platform for citizen science microbiome research.
      ).

      Methods

      Design

      A secondary data analysis of the American Gut Project (AGP) cohort (children aged 7-18 years) was conducted.

      Data Source

      The AGP is a national initiative to identify factors associated with the diversity and abundance of the gut microbiome. The AGP dataset consists of over 15,000 samples from 11,336 subjects, collected primarily from the United States, United Kingdom, and Australia (
      • McDonald D.
      • Hyde E.
      • Debelius J.W.
      • Morton J.T.
      • Gonzalez A.
      • Ackermann G.
      • Aksenov A.A.
      • Behsaz B.
      • Brennan C.
      • Chen Y.
      • Goldasich L.D.
      • Dorrestein P.C.
      • Dunn R.R.
      • Fahimipour A.K.
      • Gaffney J.
      • Gilbert J.A.
      • Gogul G.
      • Green J.L.
      • Hugenholtz P.
      • Humphrey G.
      • Huttenhower C.
      • Jackson M.A.
      • Janssen S.
      • Jeste D.V.
      • Jiang L.
      • Kelley S.T.
      • Knights D.
      • Kosciolek T.
      • Ladau J.
      • Leach J.
      • Marotz C.
      • Meleshko D.
      • Melnik A.V.
      • Metcalf J.L.
      • Mohimani H.
      • Montassier E.
      • Navas-Molina J.
      • Nguyen T.T.
      • Peddada S.
      • Pevzner P.
      • Pollard K.S.
      • Rahnavard G.
      • Robbins-Pianka A.
      • Sangwan N.
      • Shorenstein J.
      • Smarr L.
      • Song S.J.
      • Spector T.
      • Swafford A.D.
      • Thackray V.G.
      • Thompson L.R.
      • Tripathi A.
      • Vázquez-Baeza Y.
      • Vrbanac A.
      • Wischmeyer P.
      • Wolfe E.
      • Zhu Q.
      • Knight R.
      • Greene C.S.
      • Mann A.E.
      • Amir A.
      • Frazier A.
      • Martino C.
      • Lebrilla C.
      • Lozupone C.
      • Lewis C.M.
      • Raison C.
      • Zhang C.
      • Lauber C.L.
      • Warinner C.
      • Lowry C.A.
      • Callewaert C.
      • Bloss C.
      • Willner D.
      • Galzerani D.D.
      • Gonzalez D.J.
      • Mills D.A.
      • Chopra D.
      • Gevers D.
      • Berg-Lyons D.
      • Sears D.D.
      • Wendel D.
      • Lovelace E.
      • Pierce E.
      • TerAvest E.
      • Bolyen E.
      • Bushman F.D.
      • Wu G.D.
      • Church G.M.
      • Saxe G.
      • Holscher H.D.
      • Ugrina I.
      • German J.B.
      • Caporaso J.G.
      • Wozniak J.M.
      • Kerr J.
      • Ravel J.
      • Lewis J.D.
      • Suchodolski J.S.
      • Jansson J.K.
      • Hampton-Marcell J.T.
      • Bobe J.
      • Raes J.
      • Chase J.H.
      • Eisen J.A.
      • Monk J.
      • Clemente J.C.
      • Petrosino J.
      • Goodrich J.
      • Gauglitz J.
      • Jacobs J.
      • Zengler K.
      • Swanson K.S.
      • Lewis K.
      • Mayer K.
      • Bittinger K.
      • Dillon L.
      • Zaramela L.S.
      • Schriml L.M.
      • Dominguez-Bello M.G.
      • Jankowska M.M.
      • Blaser M.
      • Pirrung M.
      • Minson M.
      • Kurisu M.
      • Ajami N.
      • Gottel N.R.
      • Chia N.
      • Fierer N.
      • White O.
      • Cani P.D.
      • Gajer P.
      • Strandwitz P.
      • Kashyap P.
      • Dutton R.
      • Park R.S.
      • Xavier R.J.
      • Mills R.H.
      • Krajmalnik-Brown R.
      • Ley R.
      • Owens S.M.
      • Klemmer S.
      • Matamoros S.
      • Mirarab S.
      • Moorman S.
      • Holmes S.
      • Schwartz T.
      • Eshoo-Anton T.W.
      • Vigers T.
      • Pandey V.
      • Treuren W.V.
      • Fang X.
      • Xu Z.Z.
      • Jarmusch A.
      • Geier J.
      • Reeve N.
      • Silva R.
      • Kopylova E.
      • Nguyen D.
      • Sanders K.
      • Benitez R.A.S.
      • Heale A.C.
      • Abramson M.
      • Waldispühl J.
      • Butyaev A.
      • Drogaris C.
      • Nazarova E.
      • Ball M.
      • Gunderson B.
      American gut: An open platform for citizen science microbiome research.
      ). Following the Illumina MiSeq 515f-806r amplification protocol, 16S rRNA V4 gene region was sequenced by AGP scientists and all de-identified AGP data were then deposited into the European Bioinformatics Institute (EBI) sequence repository. The V4 region of most bacterial 16S rRNA is commonly used for taxonomic assignments, as previous studies have demonstrated the accuracy of utilizing short, hypervariable sequences for microbial identification (
      • Liu Z.
      • DeSantis T.Z.
      • Andersen G.L.
      • Knight R.
      Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers.
      ;
      • Liu Z.
      • Lozupone C.
      • Hamady M.
      • Bushman F.D.
      • Knight R.
      Short pyrosequencing reads suffice for accurate microbial community analysis.
      ). In this study, 16S rRNA single-end sequencing data (∼150bp reads) per sample and relevant metadata were obtained from the EBI repository and subsequently analyzed using Quantitative Insight Into Microbial Ecology 2 (QIIME 2) (
      • Bai J.
      • Jhaney I.
      • Daniel G.
      • Watkins Bruner D.
      Pilot study of vaginal microbiome using QIIME 2™ in women with gynecologic cancer before and after radiation therapy.
      ;
      • Bai J.
      • Jhaney I.
      • Wells J.
      Developing a reproducible microbiome data analysis pipeline using the Amazon Web Services Cloud for a cancer research group: proof-of-concept study.
      ;
      • Bolyen E.
      • Rideout J.R.
      • Dillon M.R.
      • Bokulich N.A.
      • Abnet C.C.
      • Al-Ghalith G.A.
      • Alexander H.
      • Alm E.J.
      • Arumugam M.
      • Asnicar F.
      • Bai Y.
      • Bisanz J.E.
      • Bittinger K.
      • Brejnrod A.
      • Brislawn C.J.
      • Brown C.T.
      • Callahan B.J.
      • Caraballo-Rodríguez A.M.
      • Chase J.
      • Cope E.K.
      • Da Silva R.
      • Diener C.
      • Dorrestein P.C.
      • Douglas G.M.
      • Durall D.M.
      • Duvallet C.
      • Edwardson C.F.
      • Ernst M.
      • Estaki M.
      • Fouquier J.
      • Gauglitz J.M.
      • Gibbons S.M.
      • Gibson D.L.
      • Gonzalez A.
      • Gorlick K.
      • Guo J.
      • Hillmann B.
      • Holmes S.
      • Holste H.
      • Huttenhower C.
      • Huttley G.A.
      • Janssen S.
      • Jarmusch A.K.
      • Jiang L.
      • Kaehler B.D.
      • Kang K.B.
      • Keefe C.R.
      • Keim P.
      • Kelley S.T.
      • Knights D.
      • Koester I.
      • Kosciolek T.
      • Kreps J.
      • Langille M.G.I.
      • Lee J.
      • Ley R.
      • Liu Y.-X.
      • Loftfield E.
      • Lozupone C.
      • Maher M.
      • Marotz C.
      • Martin B.D.
      • McDonald D.
      • McIver L.J.
      • Melnik A.V.
      • Metcalf J.L.
      • Morgan S.C.
      • Morton J.T.
      • Naimey A.T.
      • Navas-Molina J.A.
      • Nothias L.F.
      • Orchanian S.B.
      • Pearson T.
      • Peoples S.L.
      • Petras D.
      • Preuss M.L.
      • Pruesse E.
      • Rasmussen L.B.
      • Rivers A.
      • Robeson M.S.
      • Rosenthal P.
      • Segata N.
      • Shaffer M.
      • Shiffer A.
      • Sinha R.
      • Song S.J.
      • Spear J.R.
      • Swafford A.D.
      • Thompson L.R.
      • Torres P.J.
      • Trinh P.
      • Tripathi A.
      • Turnbaugh P.J.
      • Ul-Hasan S.
      • van der Hooft J.J.J.
      • Vargas F.
      • Vázquez-Baeza Y.
      • Vogtmann E.
      • von Hippel M.
      • Walters W.
      • Wan Y.
      • Wang M.
      • Warren J.
      • Weber K.C.
      • Williamson C.H.D.
      • Willis A.D.
      • Xu Z.Z.
      • Zaneveld J.R.
      • Zhang Y.
      • Zhu Q.
      • Knight R.
      • Caporaso J.G.
      Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
      ). The AGP indicates that all data are openly and freely released into public databases for use except information that needs to be kept confidential for privacy reasons. All the data we obtained were de-identified for further analysis.

      Sample

      A total of 15,279 samples (the gut microbiome) and 174 phenotypic variables (metadata, such as age, gender, and migraines) were assembled in the AGP dataset. Eligible samples were extracted from the EBI repository following the inclusion criteria: (1) were children aged 7-18 years; (2) had gut microbiota data (16S rRNA V4 gene sequences); and (3) had no chronic illness such as irritable bowel syndrome, cancer, and diabetes. Duplicate samples were excluded, resulting in 411 samples eligible for analysis in QIIME 2. The gut microbiome data of this cohort of children were published to understand associations of the gut microbiome with body mass index (BMI) and lifestyle factors (i.e., dietary status and physical activity) (
      • Bai J.
      • Hu Y.
      • Bruner D.W.
      Composition of gut microbiota and its association with body mass index and lifestyle factors in a cohort of 7-18 years old children from the American Gut Project.
      ).

      Measures

      Migraines

      Each child provided responses on a self-reported questionnaire about their type of migraine. The responses included: no migraine, self-diagnosed migraine, or physician (professional)-diagnosed migraine.

      Gut microbiome

      Stool specimens were collected for gut microbiome analysis as part of the AGP initiative. Following the standard data collection protocol from the Human Microbiome Project (
      • McInnes P.
      • Cutting M.
      NIH Human Microbiome Project – Core Microbiome Sampling Protocol A (HMP-A): Version 7.
      ), eligible participants who agreed to participate in the AGP registered detailed personal information online. After receiving the gut microbiome data collection kits, each participant placed the gut microbial collection tube in a built-in tube holder. Then, the participant opened the sampling swabs and collected the stool specimens via swabs. After the sample collection, the sample swabs were placed into the collection tube with the preservation solution. The collection tubes were inserted into the safety bag, sealed, and shipped to a lab ideally within 48 hours of collection.

      Demographic variables

      Participants’ demographic data included age, sex (male or female), race (Black, White, or others), and BMI. Age of children was stratified into child (7-12 years) vs. teen (13-18 years), considering the general age of pubertal development which may play a role in the gut microbiota. The stratified age groups are comparable with previous literature (
      • Bai J.
      • Hu Y.
      • Bruner D.W.
      Composition of gut microbiota and its association with body mass index and lifestyle factors in a cohort of 7-18 years old children from the American Gut Project.
      ). Age and BMI were used as continuous and categorical variables. Based on Centers for Disease Control and Prevention (CDC) guidelines, BMI percentile levels were defined as underweight (<5th percentile), normal (5th to <85th percentile); overweight (85th to <95th percentile), and obese (>95th percentile). Clinical variables extracted from the AGP dataset included use of antibiotics and probiotics.

      Ethical Consideration

      The AGP dataset were reviewed by University of California San Diego's Institutional Review Board to ensure the research was in accordance with ethical guidelines and Health Insurance Portability and Accountability Act (HIPAA) compliance. All the collected samples were de-identified to protect the privacy of participants. IRB approval is not applicable for this secondary analysis.

      Bioinformatics Preprocessing

      QIIME 2 was used to process 16S rRNA V4 gene sequences to obtain the diversity, taxonomy, and abundance of the gut microbiome. All 16S rRNA gene sequences from the AGP were obtained from the EBI repository and demultiplexed. Therefore, sequence quality control was directly implemented using dada2, a package for modeling and correcting Illumina-sequenced amplicon errors as little as one nucleotide (or called amplicon sequence variants [ASV]) (
      • Callahan B.J.
      • McMurdie P.J.
      • Rosen M.J.
      • Han A.W.
      • Johnson A.J.
      • Holmes S.P.
      DADA2: High-resolution sample inference from Illumina amplicon data.
      ). The obtained sequencing data were trimmed at 115 bp based on a Phred score of 33 (99.95% accuracy). Bacterial taxonomic analyses were conducted based on the trained classifiers of Greengenes 13_8 99% operational taxonomic units (OTUs, taxonomic assignment based on a 99% OTU similarity).

      Statistical Analysis

      All the analyses were performed using QIIME 2. Following the rarefaction curve analysis via default median feature frequencies (25,000 in our sample), 16S rRNA gene sequences with ≥3,000 feature frequencies were adequate for microbial diversity and abundance analysis, resulting in a sample size of 395 children (16 samples with <3000 frequencies removed). After removing 14 samples without migraine variables, 381 children were analyzed, combining self- and physician-diagnosed migraine categories into one group. No significant differences were found between samples with missing values and samples for the final analysis in age, sex, and race.
      Diversity analysis can assess both within-sample diversity (α-diversity) and between-sample diversity (β-diversity). The α-diversity was calculated using standard parameters: Shannon's index, Faith's phylogenetic diversity (Faith's_PD), and evenness (Pielou_e). The Spearman correlational analysis was used to analyze associations between α-diversity parameters and continuous variables such as age. The Kruskal-Wallis (pairwise) test was used to analyze α-diversity estimates associated with categorical variables (race and BMI) and the outcome variable (migraines). Bray-Curtis and weighted UniFrac distance metrics, and principal coordinates analysis (PCoA) were used to analyze and visualize patterns of β-diversity. The 2-dimensional PCoA was performed by the emperor tool (
      • Vázquez-Baeza Y.
      • Pirrung M.
      • Gonzalez A.
      • Knight R.
      EMPeror: A tool for visualizing high-throughput microbial community data.
      ).
      The abundance analysis discriminates differentially abundant taxa based on variables of interest such as migraines. Pairwise permutational multivariate analysis of variance (permANOVA) (
      • Kelly B.J.
      • Gross R.
      • Bittinger K.
      • Sherrill-Mix S.
      • Lewis J.D.
      • Collman R.G.
      • Bushman F.D.
      • Li H.
      Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA.
      ) was used to test taxa dissimilarities (β-diversity) between migraines. The analysis of composition of microbiomes (ANCOM) (
      • Mandal S.
      • Van Treuren W.
      • White R.A.
      • Eggesbo M.
      • Knight R.
      • Peddada S.D.
      Analysis of composition of microbiomes: A novel method for studying microbial composition.
      ) was used to analyze associations between migraine and the abundance of the gut microbiome. This test compares abundances of genera to determine if they change significantly between populations or environments. According to ANCOM requirements, we filtered out the taxa that only appear in one sample and taxa counts <10 across all samples. W value was computed for the statistical analysis, in which high W values indicate significant differences in abundance levels between study groups. The higher the W value, the more significant the differences in abundance levels between group.

      Results

      Subject Characteristics

      Of the 381 (5 with self-diagnosed migraines, 35 with professional diagnosis, and 341 without migraines) children included in this study, there was a mean age of 11.5 years (SD = 3.8) and 66.7% were boys. The rate of migraines, self- and physician-diagnosed, was 10.5% (1.3% and 9.2%, respectively) in this cohort. Our sample was predominantly White (85.8%). The majority (62.9%) fell within the normal BMI level, and about one third of the children were either at underweight (21.0%) or overweight and obese (16.1%) levels. The majority of children with migraines were White (p = .04), boys (p = .01), young child (p = .002), and underweight (p < .001).

      Taxonomic Analysis

      Using the trained classifier of Greengenes, all bacterial features (ASV) from 381 fecal specimens represented 28 bacterial phyla and 455 bacterial genera. The top dominant bacterial phyla included Firmicutes (41.3%), Bacteroidetes (31.3%), Proteobacteria (21%), Actinobacteria (2.5%), and Verrucomicrobia (1.8%) and the dominant bacterial genera were Bacteroides (22.8%), unidentified family Enterobacteriaceae (16.4%), Faecalibacterium (7.8%), Roseburia (4.6%), and Ruminococcus (2.7%). Figure 1 describes the relative abundances of phyla (1A) and genera (1B) according to type of the migraine diagnosis (medical professional diagnosis, self-diagnosis, or no migraine).
      Figure 1
      Figure 1Taxonomic analysis of the gut microbiome based on types of migraine diagnosis. (A) Presents the gut microbiome phyla among children without migraines (n = 341), with physician (professional)-diagnosed (n = 35) migraines, or self-diagnosed migraines (n = 5). (B) Presents the gut microbiome genera (top 30 genera) phyla among children without migraines (n = 341), with physician (professional)-diagnosed (n = 35) migraines, or self-diagnosed migraines (n = 5).

      Diversity Analysis

      The α-diversity estimates (Shannon, Faith's_PD, and Pielou's_e) were not associated with age and BMI (continuous variables) and sex. White children showed higher estimate in Shannon index (p = .02) than others. Types of migraine diagnosis were associated with α-diversity estimates (Table 1). Children without migraines showed higher Faith's_PD (p < .001) and Shannon index (p = .037) than children with medical professional diagnosis of migraines. Children without migraines showed higher Faith's_PD (p = .002), Shannon index (p = .006), and Pielou's_e (p = .024) than children with self-diagnosis of migraines. Children with medical professional diagnosed migraines showed higher Faith's_PD (p = .013), Shannon index (p = .026), and Pielou's_e (p = .035) than children with self-diagnosed migraines.
      Table 1Differences of α-Diversity based on Types of Migraine Diagnosis.
      Professional Diagnosis (n = 35) vs. No Migraine (n = 341)Professional Diagnosis (n = 35) vs. Self-Diagnosis (n = 5)Self-Diagnosis (n = 5) vs. No Migraine (n = 341)Overall (n = 381)
      Faith_PD
      Faith's Phylogenetic diversity means a qualitative measure of community richness that incorporates phylogenetic relationships between the features.
      H = 15.37H = 6.12H = 9.39H = 23.75
      p < .001p = .013p = .002p < .001
      Shannon
      Shannon's diversity index means a quantitative measure of community richness.
      H= 4.35H = 4.97H =7.46H = 11.84
      p = .037p = .026p = .006p = .008
      Pielou's Evenness
      Pielou's Evenness is a measure of community evenness. Bolded data present significant findings with p < .05.
      H = 0.50H = 4.436H = 5.10H = 5.56
      p = .479p = .035p = .024p = .135
      a Faith's Phylogenetic diversity means a qualitative measure of community richness that incorporates phylogenetic relationships between the features.
      b Shannon's diversity index means a quantitative measure of community richness.
      c Pielou's Evenness is a measure of community evenness.Bolded data present significant findings with p < .05.
      PCoA plot visualized the gut microbial dissimilarities (β-diversity) between children with migraines and without migraines based on the Bray-Curtis (Fig. 2A) and weighted UniFrac (Fig. 2B) distances. PermANOVA analyses showed that children with medical professional diagnosed migraines showed significantly different gut microbiome compared with from those without migraines (p = .001 for both β-diversity metrics) and those with self-diagnosed migraines (p = .001 for Bray-Curtis distance; p = .003 for weighed UniFrac distance) (Table 2).
      Figure 2
      Figure 2The β-diversity of the gut microbiome based on types of migraine diagnosis. (A) Presents the gut microbiome dissimilarities phyla among children without migraines (n = 341), with physician (professional)-diagnosed (n = 35) migraines, or self-diagnosed migraines (n = 5) using Bray-Curtis distance parameter. (B) Presents the gut microbiome dissimilarities phyla among children without migraines (n = 341), with physician (professional)-diagnosed (n = 35) migraines, or self-diagnosed migraines (n = 5) using weighed UniFrac distance parameter.
      Table 2Differences of β-Diversity based on Types of Migraine Diagnosis.
      Professional Diagnosis (n = 35) vs. No Migraine (n = 341)Self-Diagnosis (n = 5) vs. No Migraine (n = 341)Professional Diagnosis (n = 35) vs. Self-Diagnosis (n = 5)
      Bray-Curtis Distance
      Bray-Curtis distance means a quantitative measure of community dissimilarity.
      F = 16.73F = 2.08F = 8.07
      p = .001p = .010p = .001
      Weighted UniFrac Distance
      Weighted UniFrac distance is a quantitative measure of community dissimilarity that incorporates phylogenetic relationships between the features. Bolded data present significant findings with p < .05.
      pseudo-F = 20.22pseudo-F = 1.70pseudo-F = 8.63
      p = .001p = .149p = .003
      a Bray-Curtis distance means a quantitative measure of community dissimilarity.
      b Weighted UniFrac distance is a quantitative measure of community dissimilarity that incorporates phylogenetic relationships between the features.Bolded data present significant findings with p < .05.

      Abundance Analysis

      ANCOM was used to identify taxa associated with migraines (Table 3). Children with migraines had higher abundances in the following phyla compared with children without migraines: phylum Bacteroidetes driven genera, including Bacteroides, Parabacteroides, and Odoribacter; phylum Actinobacteria driven genera, including Eggerthella and Varibaculum; phylum Firmicutes driven genera, including SMB53, Lachnospira, Dorea, Veillonella, Anaerotruncus, Butyricicoccus, Coprobacillus, unidentified family Lachnospiraceae, unidentified family Erysipelotrichaceae, and Eubacterium; and phylum Proteobacteria driven genus Sutterella.
      Table 3Abundance Analysis of Gut Microbial Features based on Types of Migraine Diagnosis.
      Genus FeatureNo Diagnosis (n = 341) (50%)Professional Diagnosis (n = 35) (50%)Self-Diagnosis (n = 5) (50%)Reject Null HypothesisW
      Varibaculum111
      Indicates higher abundance in medical professional diagnosed migraines.
      1TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      301
      Eggerthella133
      Indicates higher abundance in medical professional diagnosed migraines.
      1TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      306
      Bacteroides4,141.519,051
      Indicates higher abundance in medical professional diagnosed migraines.
      2252TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      276
      Parabacteroides230.51,456
      Indicates higher abundance in medical professional diagnosed migraines.
      112TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      283
      Odoribacter11.5124
      Indicates higher abundance in medical professional diagnosed migraines.
      1TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      304
      Unidentified family Christensenellaceae10
      Indicates higher abundance in children without migraines.
      11TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      276
      SMB531103
      Indicates higher abundance in medical professional diagnosed migraines.
      1TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      300
      Unidentified family Lachnospiraceae260718
      Indicates higher abundance in medical professional diagnosed migraines.
      24TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      281
      Unidentified family Lachnospiraceae169
      Indicates higher abundance in children without migraines.
      181TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      309
      Anaerostipes14.5
      Indicates higher abundance in children without migraines.
      11TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      275
      Dorea57.5308
      Indicates higher abundance in medical professional diagnosed migraines.
      1TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      295
      Lachnospira156993
      Indicates higher abundance in medical professional diagnosed migraines.
      34TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      296
      Oribacterium20
      Indicates higher abundance in children without migraines.
      11TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      282
      Unidentified family Ruminococcaceae505.5
      Indicates higher abundance in children without migraines.
      119168TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      270
      Anaerotruncus112
      Indicates higher abundance in medical professional diagnosed migraines.
      1TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      302
      Butyricicoccus122
      Indicates higher abundance in medical professional diagnosed migraines.
      1TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      314
      Veillonella1102
      Indicates higher abundance in medical professional diagnosed migraines.
      1TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      306
      Unidentified family Erysipelotrichaceae77.5272
      Indicates higher abundance in medical professional diagnosed migraines.
      8TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      278
      Coprobacillus136
      Indicates higher abundance in medical professional diagnosed migraines.
      1TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      305
      Eubacterium559
      Indicates higher abundance in medical professional diagnosed migraines.
      1TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      290
      Sutterella24.52,069
      Indicates higher abundance in medical professional diagnosed migraines.
      1TRUE
      Statistical significance. Bolded data present group with significant higher abundance of bacterial taxa.
      324
      We listed the 50-percentile value from the ANCOM analysis. 50-percentile values among the higher group were bolded.
      ANCOM = analysis of composition of microbiomes.
      a Indicates higher abundance in medical professional diagnosed migraines.
      b Indicates higher abundance in children without migraines.
      c Statistical significance.Bolded data present group with significant higher abundance of bacterial taxa.
      Children without migraines had higher abundances in phylum Firmicutes driven genera, including unidentified families Christensenellaceae, Lachnospiraceae, and Ruminococcaceae, Anaerostipes, and Oribacterium.

      Discussion

      The rate of migraines was 10.5% among children from the AGP cohort. We found that children with migraines had an overall lower diversity in the gut microbiome (
      • Chen J.
      • Wang Q.
      • Wang A.
      • Lin Z.
      Structural and functional characterization of the gut microbiota in elderly women with migraine.
      ) and a higher abundance of inflammation-related bacteria (e.g., Eggerthella, Sutterella, and Eubacterium) (
      • Li F.
      • Han Y.
      • Cai X.
      • Gu M.
      • Sun J.
      • Qi C.
      • Goulette T.
      • Song M.
      • Li Z.
      • Xiao H.
      Dietary resveratrol attenuated colitis and modulated gut microbiota in dextran sulfate sodium-treated mice.
      ;
      • Nikolova V.L.
      • Hall M.R.B.
      • Hall L.J.
      • Cleare A.J.
      • Stone J.M.
      • Young A.H.
      Perturbations in gut microbiota composition in psychiatric disorders: A review and meta-analysis.
      ) compared with those without migraines. The AGP data provide a large and representative sample to explore the associations between the gut microbiome and migraines. However, interpretations of these findings should be cautious due to analysis of 16S rRNA sequences, which could not examine specific species or strains associated with migraines in this study.
      Dysbiosis of the gut microbiome can be attributed to a variety of factors, such as genetics, use of medications (e.g., antibiotics), diet, and disease status (
      • Bai J.
      • Hu Y.
      • Bruner D.W.
      Composition of gut microbiota and its association with body mass index and lifestyle factors in a cohort of 7-18 years old children from the American Gut Project.
      ;
      • Wen L.
      • Duffy A.
      Factors influencing the gut microbiota, inflammation, and type 2 diabetes.
      ). This study examined the associations of the gut microbiome with migraines (assessed as no migraine, self-diagnosed, or medical professional-diagnosed migraines) in children. Children with migraines showed a lower α-diversity (microbial richness assessed by Shannon and Faith's_PD indices; and evenness assessed by Pielou's_e). Meanwhile, we observed enriched Actinobacteria, Firmicutes, and Proteobacteria phyla in children with migraines. These findings were consistent with previous observations on migraines in elderly women, including a lower gut microbial diversity and concurrent increases in harmful bacteria, including those in the Firmicutes phylum (
      • Chen J.
      • Wang Q.
      • Wang A.
      • Lin Z.
      Structural and functional characterization of the gut microbiota in elderly women with migraine.
      ). Additionally, a meta-analysis on the relationship between Helicobacter (H.) pylori (from the phylum Proteobacteria) and migraines elucidated that H. pylori infection was significantly greater in migraineurs than in the control groups (
      • Su J.
      • Zhou X.Y.
      • Zhang G.X.
      Association between Helicobacter pylori infection and migraine: A meta-analysis.
      ), showing consistent findings with this study.
      Migraines in children may have a similar gut microbial dysbiosis-induced cause as reported in adult population, including shifts in the gut microbial diversity as well as in the relative abundance of probiotic versus pathogenic bacteria. We found that children without migraines showed a higher α-diversity. A higher diversity of the gut microbiome is contributed to healthier lifestyles and better disease outcomes (
      • Bai J.
      • Hu Y.
      • Bruner D.W.
      Composition of gut microbiota and its association with body mass index and lifestyle factors in a cohort of 7-18 years old children from the American Gut Project.
      ;
      • Manor O.
      • Dai C.L.
      • Kornilov S.A.
      • Smith B.
      • Price N.D.
      • Lovejoy J.C.
      • Gibbons S.M.
      • Magis A.T.
      Health and disease markers correlate with gut microbiome composition across thousands of people.
      ).
      • Manor O.
      • Dai C.L.
      • Kornilov S.A.
      • Smith B.
      • Price N.D.
      • Lovejoy J.C.
      • Gibbons S.M.
      • Magis A.T.
      Health and disease markers correlate with gut microbiome composition across thousands of people.
      found that those who had higher levels of physical activities and healthier diet, which was measured by amount of fruits and vegetables consumed, were associated with a higher microbial diversity (
      • Manor O.
      • Dai C.L.
      • Kornilov S.A.
      • Smith B.
      • Price N.D.
      • Lovejoy J.C.
      • Gibbons S.M.
      • Magis A.T.
      Health and disease markers correlate with gut microbiome composition across thousands of people.
      ). Consistent with these findings, a lower α-diversity is often associated with negative health outcomes, such as inflammatory bowel diseases, autism, and obesity (
      • Cotillard A.
      • Kennedy S.P.
      • Kong L.C.
      • Prifti E.
      • Pons N.
      • Le Chatelier E.
      • Almeida M.
      • Quinquis B.
      • Levenez F.
      • Galleron N.
      • Gougis S.
      • Rizkalla S.
      • Batto J.M.
      • Renault P.
      • Doré J.
      • Zucker J.D.
      • Clément K.
      • Ehrlich S.D.
      Dietary intervention impact on gut microbial gene richness.
      ;
      • Kang D.W.
      • Park J.G.
      • Ilhan Z.E.
      • Wallstrom G.
      • Labaer J.
      • Adams J.B.
      • Krajmalnik-Brown R.
      Reduced incidence of Prevotella and other fermenters in intestinal microflora of autistic children.
      ;
      • Mosca A.
      • Leclerc M.
      • Hugot J.P.
      Gut microbiota diversity and human diseases: Should we reintroduce key predators in our ecosystem?.
      ;
      • Pickard J.M.
      • Zeng M.Y.
      • Caruso R.
      • Núñez G.
      Gut microbiota: Role in pathogen colonization, immune responses, and inflammatory disease.
      ). Therefore, our findings seemed to reflect previous work regarding changes of the gut microbial diversity and its contribution to migraines.
      Our study found an increase in Eggerthella among those with physician-diagnosed migraines compared to non-migraineurs. Eggerthella is a Gram-positive, non-sporulating bacterial genus of Actinomycetota that is anaerobic and commonly isolated in the GI tract (
      • Lau S.K.
      • Woo P.C.
      • Fung A.M.
      • Chan K.-M.
      • Woo G.K.
      • Yuen K.-Y.
      Anaerobic, non-sporulating, Gram-positive bacilli bacteraemia characterized by 16S rRNA gene sequencing.
      ). This bacterial genus has been linked to clinically significant bacteremia and underlying GI diseases, suggesting a high level of pathogenicity, although its mechanisms have yet to be defined (
      • Lau S.K.
      • Woo P.C.
      • Fung A.M.
      • Chan K.-M.
      • Woo G.K.
      • Yuen K.-Y.
      Anaerobic, non-sporulating, Gram-positive bacilli bacteraemia characterized by 16S rRNA gene sequencing.
      ). Similarly, a meta-analysis has elucidated those elevated levels of Eggerthella are linked to mental disorders, such as depression, bipolar disorder, and schizophrenia (
      • Nikolova V.L.
      • Hall M.R.B.
      • Hall L.J.
      • Cleare A.J.
      • Stone J.M.
      • Young A.H.
      Perturbations in gut microbiota composition in psychiatric disorders: A review and meta-analysis.
      ). This may be attributed to Eggerthella-associated depletion of short-chain fatty acid (SCFA) butyrate in individuals (
      • Simpson C.A.
      • Diaz-Arteche C.
      • Eliby D.
      • Schwartz O.S.
      • Simmons J.G.
      • Cowan C.S.M.
      The gut microbiota in anxiety and depression – A systematic review.
      ).
      This study reported elevated levels of Varibaculum, Veillonellaceae, Bacteridaceae, Anaerotruncus, Sutterella, and Erysipelotrichaceae in migraineurs compared with controls. Most Varibaculum isolates reduce nitrate to nitrite in respiratory denitrification (
      • Hall V.
      Varibaculum. In Bergey's manual of systematics of archaea and bacteria.
      ). Especially with an increase of nitrates in the Western diet, overproduction of nitrites from endogenous processes can be harmful. Previous studies have observed an association between increase in nitrate production and inflammatory disease and inhibition of other bacterial species, resulting in decreased α-diversity (
      • Leclerc M.
      • Bedu-Ferrari C.
      • Etienne-Mesmin L.
      • Mariadassou M.
      • Lebreuilly L.
      • Tran S.L.
      • Brazeau L.
      • Mayeur C.
      • Delmas J.
      • Rué O.
      • Denis S.
      • Blanquet-Diot S.
      • Ramarao N.
      • Rawls J.F.
      Nitric oxide impacts human gut microbiota diversity and functionalities.
      ;
      • Lundberg J.O.
      • Weitzberg E.
      • Cole J.A.
      • Benjamin N.
      Nitrate, bacteria and human health.
      ). High nitric oxide (NO) concentrations from bacterial denitrification in the GI tract reduces the butyrate-producing species (
      • Leclerc M.
      • Bedu-Ferrari C.
      • Etienne-Mesmin L.
      • Mariadassou M.
      • Lebreuilly L.
      • Tran S.L.
      • Brazeau L.
      • Mayeur C.
      • Delmas J.
      • Rué O.
      • Denis S.
      • Blanquet-Diot S.
      • Ramarao N.
      • Rawls J.F.
      Nitric oxide impacts human gut microbiota diversity and functionalities.
      ). Leclerc et al.’s study also observed a dose-dependent impact of NO, such as an inhibition of Ruminococcaceae and increased Veillonellaceae and Bacteridaceae, consistent with our findings. Similarly, Veillonella, another nitrate-producing bacterium, was more abundant in patients with inflammatory diseases (
      • Bajer L.
      • Kverka M.
      • Kostovcik M.
      • Macinga P.
      • Dvorak J.
      • Stehlikova Z.
      • Brezina J.
      • Wohl P.
      • Spicak J.
      • Drastich P.
      Distinct gut microbiota profiles in patients with primary sclerosing cholangitis and ulcerative colitis.
      ).
      Dorea is positively associated with intestinal permeability and pro-inflammatory markers (
      • Leclercq S.
      • Matamoros S.
      • Cani P.D.
      • Neyrinck A.M.
      • Jamar F.
      • Stärkel P.
      • Windey K.
      • Tremaroli V.
      • Bäckhed F.
      • Verbeke K.
      • de Timary P.
      • Delzenne N.M.
      Intestinal permeability, gut-bacterial dysbiosis, and behavioral markers of alcohol-dependence severity.
      ;
      • Schirmer M.
      • Smeekens S.P.
      • Vlamakis H.
      • Jaeger M.
      • Oosting M.
      • Franzosa E.A.
      • Ter Horst R.
      • Jansen T.
      • Jacobs L.
      • Bonder M.J.
      • Kurilshikov A.
      • Fu J.
      • Joosten L.A.B.
      • Zhernakova A.
      • Huttenhower C.
      • Wijmenga C.
      • Netea M.G.
      • Xavier R.J
      Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity.
      ).
      • Schirmer M.
      • Smeekens S.P.
      • Vlamakis H.
      • Jaeger M.
      • Oosting M.
      • Franzosa E.A.
      • Ter Horst R.
      • Jansen T.
      • Jacobs L.
      • Bonder M.J.
      • Kurilshikov A.
      • Fu J.
      • Joosten L.A.B.
      • Zhernakova A.
      • Huttenhower C.
      • Wijmenga C.
      • Netea M.G.
      • Xavier R.J
      Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity.
      elucidated an increase in INF-γ with a higher abundance of certain Dorea species. Anaerotruncus is found to be positively associated with bloating and abdominal pain (
      • Jalanka-Tuovinen J.
      • Salonen A.
      • Nikkilä J.
      • Immonen O.
      • Kekkonen R.
      • Lahti L.
      • Palva A.
      • de Vos W.M.
      Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms.
      ), while Sutterella is found to have mild pro-inflammatory properties, such as inducing TNF-α and a dose-dependent interleukin (IL)-8 response in the GI tract (
      • Hiippala K.
      • Kainulainen V.
      • Kalliomäki M.
      • Arkkila P.
      • Satokari R.
      Mucosal prevalence and interactions with the epithelium indicate commensalism of Sutterella spp.
      ). Erysipelotrichaceae family is often found enriched in inflammation-related outcomes such as colorectal cancer, Crohn's disease-like disorder, and obesity (
      • Chen W.
      • Liu F.
      • Ling Z.
      • Tong X.
      • Xiang C.
      Human intestinal lumen and mucosa-associated microbiota in patients with colorectal cancer.
      ;
      • Schaubeck M.
      • Clavel T.
      • Calasan J.
      • Lagkouvardos I.
      • Haange S.B.
      • Jehmlich N.
      • Basic M.
      • Dupont A.
      • Hornef M.
      • von Bergen M.
      • Bleich A.
      • Haller D.
      Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence.
      ). It has also been associated with elevated TNF-α levels (
      • Dinh D.M.
      • Volpe G.E.
      • Duffalo C.
      • Bhalchandra S.
      • Tai A.K.
      • Kane A.V.
      • Wanke C.A.
      • Ward H.D.
      Intestinal microbiota, microbial translocation, and systemic inflammation in chronic HIV infection.
      ). Therefore, dysbiosis of the gut microbiome may contribute to migraines via different biological mechanisms, particularly inflammation.
      Our study also elucidated certain gut microbes that may protect children from migraines (e.g., probiotics). The protective mechanism of probiotics has been linked to butyrate production. Butyrate plays a vital role in maintaining the intestinal mucosal lining and has anti-inflammatory properties via inhibition of regulatory proteins involved in the early immune inflammatory response (
      • Canani R.B.
      • Di Costanzo M.
      • Leone L.
      • Pedata M.
      • Meli R.
      • Calignano A.
      Potential beneficial effects of butyrate in intestinal and extraintestinal diseases.
      ;
      • Simpson C.A.
      • Diaz-Arteche C.
      • Eliby D.
      • Schwartz O.S.
      • Simmons J.G.
      • Cowan C.S.M.
      The gut microbiota in anxiety and depression – A systematic review.
      ). Negative health outcomes are commonly associated with a decrease in Ruminococcaceae, including Crohn's disease and high NO concentrations from an abundance of denitrifying bacteria (
      • Leclerc M.
      • Bedu-Ferrari C.
      • Etienne-Mesmin L.
      • Mariadassou M.
      • Lebreuilly L.
      • Tran S.L.
      • Brazeau L.
      • Mayeur C.
      • Delmas J.
      • Rué O.
      • Denis S.
      • Blanquet-Diot S.
      • Ramarao N.
      • Rawls J.F.
      Nitric oxide impacts human gut microbiota diversity and functionalities.
      ;
      • Morgan X.C.
      • Tickle T.L.
      • Sokol H.
      • Gevers D.
      • Devaney K.L.
      • Ward D.V.
      • Reyes J.A.
      • Shah S.A.
      • LeLeiko N.
      • Snapper S.B.
      • Bousvaros A.
      • Korzenik J.
      • Sands B.E.
      • Xavier R.J.
      • Huttenhower C.
      Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment.
      ). The protective mechanism of Ruminococcaceae may be attributed to its prebiotic functions, such as butyrate production and starch fermentation abilities in the GI tract, promoting the growth of other beneficial bacteria (
      • La Reau A.J.
      • Suen G
      The Ruminococci: Key symbionts of the gut ecosystem.
      ). Ruminococcaceae has also been found to be negatively correlated with inflammatory markers (
      • Brahe L.K.
      • Le Chatelier E.
      • Prifti E.
      • Pons N.
      • Kennedy S.
      • Hansen T.
      • Pedersen O.
      • Astrup A.
      • Ehrlich S.D.
      • Larsen L.H.
      Specific gut microbiota features and metabolic markers in postmenopausal women with obesity.
      ). Christensenellaceae family is found to be inversely related to host BMI and visceral fat mass, contributing to disorders such as obesity and inflammatory diseases (
      • Beaumont M.
      • Goodrich J.K.
      • Jackson M.A.
      • Yet I.
      • Davenport E.R.
      • Vieira-Silva S.
      • Debelius J.
      • Pallister T.
      • Mangino M.
      • Raes J.
      • Knight R.
      • Clark A.G.
      • Ley R.E.
      • Spector T.D.
      • Bell J.T.
      Heritable components of the human fecal microbiome are associated with visceral fat.
      ;
      • Goodrich Julia K.
      • Waters Jillian L.
      • Poole Angela C.
      • Sutter Jessica L.
      • Koren O.
      • Blekhman R.
      • Beaumont M.
      • Van Treuren W.
      • Knight R.
      • Bell Jordana T.
      • Spector Timothy D.
      • Clark Andrew G.
      • Ley Ruth E.
      Human genetics shape the gut microbiome.
      ;
      • Waters J.L.
      • Ley R.E.
      The human gut bacteria Christensenellaceae are widespread, heritable, and associated with health.
      ). This microbial family has also been consistently depleted in individuals with Crohn's disease and ulcerative colitis (
      • Waters J.L.
      • Ley R.E.
      The human gut bacteria Christensenellaceae are widespread, heritable, and associated with health.
      ). In individuals with a protective allele against Crohn's disease, a greater abundance of Christensenellaceae was observed (
      • Zakrzewski M.
      • Simms L.A.
      • Brown A.
      • Appleyard M.
      • Irwin J.
      • Waddell N.
      • Radford-Smith G.L.
      IL23R-protective coding variant promotes beneficial bacteria and diversity in the ileal microbiome in healthy individuals without inflammatory bowel disease.
      ). Thus, there is compelling evidence to support Christensenellaceae's beneficial effect on host health, although its protective mechanisms have yet to be fully characterized. Additionally,
      • Wang J.
      • Lang T.
      • Shen J.
      • Dai J.
      • Tian L.
      • Wang X.
      Core gut bacteria analysis of healthy mice.
      found Anaerostipes in all healthy mice (
      • Wang J.
      • Lang T.
      • Shen J.
      • Dai J.
      • Tian L.
      • Wang X.
      Core gut bacteria analysis of healthy mice.
      ). As it is uniquely able to metabolize sugars, lactate, and acetate into butyrate, this genus is also one of the most abundant taxa of the healthy core gut microbiome (
      • Louis P.
      • Flint H.J.
      Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine.
      ;
      • Tap J.
      • Mondot S.
      • Levenez F.
      • Pelletier E.
      • Caron C.
      • Furet J.P.
      • Ugarte E.
      • Muñoz-Tamayo R.
      • Paslier D.L.
      • Nalin R.
      • Dore J.
      • Leclerc M.
      Towards the human intestinal microbiota phylogenetic core.
      ). All these findings provide innovative evidence to potentially target to relieve migraines among children, which need to be further corroborated in a more diverse population.

      Limitations

      This study has several limitations. Participants in the AGP were overwhelmingly White (85%) and thus, interpretation of our findings should be cautious as it does not represent minoritized populations. Some migraines were self-diagnosed, without a formal definition utilized in the questionnaire. Additionally, this study was a cross-sectional analysis of the gut microbiome data, which are unable to elucidate the long-term effects of the gut microbiome or temporality between microbiome changes and the onset of pediatric migraines. Moreover, we did not report the impact of any other variables, such as antibiotics and probiotics on the gut microbiome, which has been reported in previous work (
      • Bai J.
      • Hu Y.
      • Bruner D.W.
      Composition of gut microbiota and its association with body mass index and lifestyle factors in a cohort of 7-18 years old children from the American Gut Project.
      ).

      Conclusions

      This study found that 10.5% of children from the AGP cohort were reported as medical professional diagnosed or self-diagnosed migraines. Children with migraines had a lower diversity and higher abundances of inflammatory-related bacteria, such as Eggerthella, Sutterella, and Eubacterium. Associations between gut microbiome diversity and abundances and migraines in children suggested potential biologic mechanisms of migraines. Future work is required to examine these relationships.

      Clinical Implications

      Findings of this study emphasized the impact of the gut microbiome on migraines among children aged 7-18 years old, which has significant implications for nursing practice and nursing science. As the first study in children, our consistent findings with previous work in adults and other populations support the potential target to decrease the impact of migraines in children via improving gut health (e.g, the gut microbiome). Nurses play a critical role in health education and advocation for healthy lifestyles. With the identification of specific microbial taxa associated with migraines, nurses could educate children with migraines on building a healthy gut microbiome, such as eating healthy and promoting physical activities (
      • Arzani M.
      • Jahromi S.R.
      • Ghorbani Z.
      • Vahabizad F.
      • Martelletti P.
      • Ghaemi A.
      • Sacco S.
      • Togha M.
      School of Advanced Studies of the European Headache Foundation (EHF-SAS)
      Gut-brain Axis and migraine headache: A comprehensive review.
      ;
      • Bai J.
      • Zhang W.
      • Amirkhanzadeh Barandouzir Z.
      Human microbiome: Understanding the role of the gut microbiome and implications for oncology nursing care.
      ). These lifestyle interventions can assist in decreasing the negative impact of migraines on daily activities, school performance, and even quality of life. Additionally, nurses, through working with parents or caregivers of children, can build and implement specific gut health programs (e.g., appropriate consumption of fiber per day, adhering to a low glycemic index diet, supplementation with vitamin D, omega-3, and probiotics) to help prevent migraines. Due to the prevalence of obesity in children, weight loss dietary plans should be considered for children with overweight and obese status. For nursing scientists, as biologic mechanisms between the gut microbiome and migraines have not been clearly characterized, more work is needed to examine composition and functional capabilities of the gut microbiome that contribute to the development and severity of migraines in children.

      Declaration of Competing Interest

      No conflict of interest was declared.

      Acknowledgments

      We would like to thank all the participants in the AGP. The first author is supported by funding from National Institute of Health/National Institute of Nursing Research (1K99NR017897-01 and 4R00NR017897-03).

      References

        • Abu-Arafeh I.
        • Razak S.
        • Sivaraman B.
        • Graham C.
        Prevalence of headache and migraine in children and adolescents: a systematic review of population-based studies.
        Devolpmental Medicine and Child Neurology. 2010; 52: 1088-1097
        • Arruda M.A.
        • Bigal M.E.
        Migraine and migraine subtypes in preadolescent children: Association with school performance.
        Neurology. 2012; 79: 1881-1888
        • Arzani M.
        • Jahromi S.R.
        • Ghorbani Z.
        • Vahabizad F.
        • Martelletti P.
        • Ghaemi A.
        • Sacco S.
        • Togha M.
        • School of Advanced Studies of the European Headache Foundation (EHF-SAS)
        Gut-brain Axis and migraine headache: A comprehensive review.
        Journal of Headache and Pain. 2020; 21: 15
        • Bai J.
        • Hu Y.
        • Bruner D.W.
        Composition of gut microbiota and its association with body mass index and lifestyle factors in a cohort of 7-18 years old children from the American Gut Project.
        Pediatric Obesity. 2019; 14: e12480https://doi.org/10.1111/ijpo.12480
        • Bai J.
        • Jhaney I.
        • Daniel G.
        • Watkins Bruner D.
        Pilot study of vaginal microbiome using QIIME 2™ in women with gynecologic cancer before and after radiation therapy.
        Oncology Nursing Forum. 2019; 46: E48-E59
        • Bai J.
        • Zhang W.
        • Amirkhanzadeh Barandouzir Z.
        Human microbiome: Understanding the role of the gut microbiome and implications for oncology nursing care.
        Clinical Journal of Oncology Nursing. 2021; 25: 383-387
        • Bai J.
        • Jhaney I.
        • Wells J.
        Developing a reproducible microbiome data analysis pipeline using the Amazon Web Services Cloud for a cancer research group: proof-of-concept study.
        JMIR medical informatics. 2019; 7e14667
        • Bajer L.
        • Kverka M.
        • Kostovcik M.
        • Macinga P.
        • Dvorak J.
        • Stehlikova Z.
        • Brezina J.
        • Wohl P.
        • Spicak J.
        • Drastich P.
        Distinct gut microbiota profiles in patients with primary sclerosing cholangitis and ulcerative colitis.
        World Journal of Gastroenterology. 2017; 23: 4548-4558
        • Bajic J.E.
        • Johnston I.N.
        • Howarth G.S.
        • Hutchinson M.R.
        From the bottom-up: Chemotherapy and gut-brain axis dysregulation. (2018).
        Frontiers in Behavioral Neuroscience. 2018; 12: 104
        • Beaumont M.
        • Goodrich J.K.
        • Jackson M.A.
        • Yet I.
        • Davenport E.R.
        • Vieira-Silva S.
        • Debelius J.
        • Pallister T.
        • Mangino M.
        • Raes J.
        • Knight R.
        • Clark A.G.
        • Ley R.E.
        • Spector T.D.
        • Bell J.T.
        Heritable components of the human fecal microbiome are associated with visceral fat.
        Genome Biology. 2016; 17: 189
        • Bolyen E.
        • Rideout J.R.
        • Dillon M.R.
        • Bokulich N.A.
        • Abnet C.C.
        • Al-Ghalith G.A.
        • Alexander H.
        • Alm E.J.
        • Arumugam M.
        • Asnicar F.
        • Bai Y.
        • Bisanz J.E.
        • Bittinger K.
        • Brejnrod A.
        • Brislawn C.J.
        • Brown C.T.
        • Callahan B.J.
        • Caraballo-Rodríguez A.M.
        • Chase J.
        • Cope E.K.
        • Da Silva R.
        • Diener C.
        • Dorrestein P.C.
        • Douglas G.M.
        • Durall D.M.
        • Duvallet C.
        • Edwardson C.F.
        • Ernst M.
        • Estaki M.
        • Fouquier J.
        • Gauglitz J.M.
        • Gibbons S.M.
        • Gibson D.L.
        • Gonzalez A.
        • Gorlick K.
        • Guo J.
        • Hillmann B.
        • Holmes S.
        • Holste H.
        • Huttenhower C.
        • Huttley G.A.
        • Janssen S.
        • Jarmusch A.K.
        • Jiang L.
        • Kaehler B.D.
        • Kang K.B.
        • Keefe C.R.
        • Keim P.
        • Kelley S.T.
        • Knights D.
        • Koester I.
        • Kosciolek T.
        • Kreps J.
        • Langille M.G.I.
        • Lee J.
        • Ley R.
        • Liu Y.-X.
        • Loftfield E.
        • Lozupone C.
        • Maher M.
        • Marotz C.
        • Martin B.D.
        • McDonald D.
        • McIver L.J.
        • Melnik A.V.
        • Metcalf J.L.
        • Morgan S.C.
        • Morton J.T.
        • Naimey A.T.
        • Navas-Molina J.A.
        • Nothias L.F.
        • Orchanian S.B.
        • Pearson T.
        • Peoples S.L.
        • Petras D.
        • Preuss M.L.
        • Pruesse E.
        • Rasmussen L.B.
        • Rivers A.
        • Robeson M.S.
        • Rosenthal P.
        • Segata N.
        • Shaffer M.
        • Shiffer A.
        • Sinha R.
        • Song S.J.
        • Spear J.R.
        • Swafford A.D.
        • Thompson L.R.
        • Torres P.J.
        • Trinh P.
        • Tripathi A.
        • Turnbaugh P.J.
        • Ul-Hasan S.
        • van der Hooft J.J.J.
        • Vargas F.
        • Vázquez-Baeza Y.
        • Vogtmann E.
        • von Hippel M.
        • Walters W.
        • Wan Y.
        • Wang M.
        • Warren J.
        • Weber K.C.
        • Williamson C.H.D.
        • Willis A.D.
        • Xu Z.Z.
        • Zaneveld J.R.
        • Zhang Y.
        • Zhu Q.
        • Knight R.
        • Caporaso J.G.
        Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
        Nature Biotechnology. 2019; 37: 852-857
        • Brahe L.K.
        • Le Chatelier E.
        • Prifti E.
        • Pons N.
        • Kennedy S.
        • Hansen T.
        • Pedersen O.
        • Astrup A.
        • Ehrlich S.D.
        • Larsen L.H.
        Specific gut microbiota features and metabolic markers in postmenopausal women with obesity.
        Nutrition & Diabetes. 2015; 5: e159
        • Cady R.K.
        • Farmer K.
        • Dexter J.K.
        • Hall J.
        The bowel and migraine: Update on celiac disease and irritable bowel syndrome.
        Current Pain and Headache Reports. 2012; 16: 278-286
        • Callahan B.J.
        • McMurdie P.J.
        • Rosen M.J.
        • Han A.W.
        • Johnson A.J.
        • Holmes S.P.
        DADA2: High-resolution sample inference from Illumina amplicon data.
        Nature Methods. 2016; 13: 581-583
        • Canani R.B.
        • Di Costanzo M.
        • Leone L.
        • Pedata M.
        • Meli R.
        • Calignano A.
        Potential beneficial effects of butyrate in intestinal and extraintestinal diseases.
        World Journal of Gastroenterology. 2011; 17: 1519-1528
        • Chen J.
        • Wang Q.
        • Wang A.
        • Lin Z.
        Structural and functional characterization of the gut microbiota in elderly women with migraine.
        Frontiers in Cellular and Infection Microbiology. 2020; 9: 470
        • Chen W.
        • Liu F.
        • Ling Z.
        • Tong X.
        • Xiang C.
        Human intestinal lumen and mucosa-associated microbiota in patients with colorectal cancer.
        PLoS One. 2012; 7: e39743
        • Cotillard A.
        • Kennedy S.P.
        • Kong L.C.
        • Prifti E.
        • Pons N.
        • Le Chatelier E.
        • Almeida M.
        • Quinquis B.
        • Levenez F.
        • Galleron N.
        • Gougis S.
        • Rizkalla S.
        • Batto J.M.
        • Renault P.
        • Doré J.
        • Zucker J.D.
        • Clément K.
        • Ehrlich S.D.
        Dietary intervention impact on gut microbial gene richness.
        Nature. 2013; 500: 585-588
        • Dethlefsen L.
        • McFall-Ngai M.
        • Relman D.A.
        An ecological and evolutionary perspective on human-microbe mutualism and disease.
        Nature. 2007; 449: 811-818
        • Dinh D.M.
        • Volpe G.E.
        • Duffalo C.
        • Bhalchandra S.
        • Tai A.K.
        • Kane A.V.
        • Wanke C.A.
        • Ward H.D.
        Intestinal microbiota, microbial translocation, and systemic inflammation in chronic HIV infection.
        Journal of Infectious Diseases. 2015; 211: 19-27
        • Dooley J.M.
        • Pearlman E.M.
        The clinical spectrum of migraine in children.
        Pediatr Annals. 2010; 39: 408-415
        • Farooqui T.
        Chapter 15 - Contribution of gut microbiota in the pathogenesis of migraine headache.
        in: Farooqui T. Farooqui A.A. Gut microbiota in neurologic and visceral diseases. Academic Press, Cambridge, MA2021: 267-286
        • Gonzalez A.
        • Hyde E.
        • Sangwan N.
        • Gilbert J.A.
        • Viirre E.
        • Knight R.
        Migraines are correlated with higher levels of nitrate-, nitrite-, and nitric oxide-reducing oral microbes in the American Gut Project Cohort.
        mSystems. 2016; 1: e00105-e00116
        • Goodrich Julia K.
        • Waters Jillian L.
        • Poole Angela C.
        • Sutter Jessica L.
        • Koren O.
        • Blekhman R.
        • Beaumont M.
        • Van Treuren W.
        • Knight R.
        • Bell Jordana T.
        • Spector Timothy D.
        • Clark Andrew G.
        • Ley Ruth E.
        Human genetics shape the gut microbiome.
        Cell. 2014; 159: 789-799
        • Green A.
        • Kabbouche M.
        • Kacperski J.
        • Hershey A.
        • O'Brien H
        Managing migraine headaches in children and adolescents.
        Expert Review of Clinical Pharmacology. 2016; 9: 477-482
        • Hakansson A.
        • Molin G.
        Gut microbiota and inflammation.
        Nutrients. 2011; 3: 637-682
        • Hall A.B.
        • Yassour M.
        • Sauk J.
        • Garner A.
        • Jiang X.
        • Arthur T.
        • Lagoudas G.K.
        • Vatanen T.
        • Fornelos N.
        • Wilson R.
        • Bertha M.
        • Cohen M.
        • Garber J.
        • Khalili H.
        • Gevers D.
        • Ananthakrishnan A.N.
        • Kugathasan S.
        • Lander E.S.
        • Blainey P.
        • Vlamakis H.
        • Xavier R.J.
        • Huttenhower C.
        A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients.
        Genome Medicine. 2017; 9: 103
        • Hall V.
        Varibaculum. In Bergey's manual of systematics of archaea and bacteria.
        John Wiley & Sons, Hoboken, NJ2015: 1-4
        • Hansen S.G.
        • Skov M.N.
        • Justesen U.S.
        Two cases of Ruminococcus gnavus bacteremia associated with diverticulitis.
        Journal of Clinical Microbiology. 2013; 51: 1334-1336
        • Hershey A.D.
        Current approaches to the diagnosis and management of paediatric migraine.
        Lancet Neurology. 2010; 9: 190-204
        • Hiippala K.
        • Kainulainen V.
        • Kalliomäki M.
        • Arkkila P.
        • Satokari R.
        Mucosal prevalence and interactions with the epithelium indicate commensalism of Sutterella spp.
        Frontiers in Microbiology. 2016; 7: 1706
        • Hindiyeh N.
        • Aurora S.K.
        What the gut can teach us about migraine.
        Current Pain and Headache Reports. 2015; 19: 33
        • Jalanka-Tuovinen J.
        • Salonen A.
        • Nikkilä J.
        • Immonen O.
        • Kekkonen R.
        • Lahti L.
        • Palva A.
        • de Vos W.M.
        Intestinal microbiota in healthy adults: temporal analysis reveals individual and common core and relation to intestinal symptoms.
        PLoS One. 2011; 6: e23035
        • Kang D.W.
        • Park J.G.
        • Ilhan Z.E.
        • Wallstrom G.
        • Labaer J.
        • Adams J.B.
        • Krajmalnik-Brown R.
        Reduced incidence of Prevotella and other fermenters in intestinal microflora of autistic children.
        PLoS One. 2013; 8: e68322
        • Kelly B.J.
        • Gross R.
        • Bittinger K.
        • Sherrill-Mix S.
        • Lewis J.D.
        • Collman R.G.
        • Bushman F.D.
        • Li H.
        Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA.
        Bioinformatics. 2015; 31: 2461-2468
        • Kim S.
        • Zhang W.
        • Pak V.
        • Aqua J.K.
        • Hertzberg V.S.
        • Spahr C.M.
        • Bai J.
        How stress, discrimination, acculturation and the gut microbiome affect depression, anxiety and sleep among Chinese and Korean immigrants in the USA: a cross-sectional pilot study protocol.
        BMJ Open. 2021; 11e047281
        • Knight R.
        • Buhler B.
        Follow your gut: the enormous impact of tiny microbes.
        Simon & Schuster/TED, New York2015
        • La Reau A.J.
        • Suen G
        The Ruminococci: Key symbionts of the gut ecosystem.
        Journal of Microbiology. 2018; 56: 199-208
        • Lau S.K.
        • Woo P.C.
        • Fung A.M.
        • Chan K.-M.
        • Woo G.K.
        • Yuen K.-Y.
        Anaerobic, non-sporulating, Gram-positive bacilli bacteraemia characterized by 16S rRNA gene sequencing.
        Journal of Medical Microbiology. 2004; 53: 1247-1253
        • Leclerc M.
        • Bedu-Ferrari C.
        • Etienne-Mesmin L.
        • Mariadassou M.
        • Lebreuilly L.
        • Tran S.L.
        • Brazeau L.
        • Mayeur C.
        • Delmas J.
        • Rué O.
        • Denis S.
        • Blanquet-Diot S.
        • Ramarao N.
        • Rawls J.F.
        Nitric oxide impacts human gut microbiota diversity and functionalities.
        mSystems. 2021; 6e0055821
        • Leclercq S.
        • Matamoros S.
        • Cani P.D.
        • Neyrinck A.M.
        • Jamar F.
        • Stärkel P.
        • Windey K.
        • Tremaroli V.
        • Bäckhed F.
        • Verbeke K.
        • de Timary P.
        • Delzenne N.M.
        Intestinal permeability, gut-bacterial dysbiosis, and behavioral markers of alcohol-dependence severity.
        Proceedings of the National Academy of Sciences of the United States of America. 2014; 111: E4485-E4493
        • Li F.
        • Han Y.
        • Cai X.
        • Gu M.
        • Sun J.
        • Qi C.
        • Goulette T.
        • Song M.
        • Li Z.
        • Xiao H.
        Dietary resveratrol attenuated colitis and modulated gut microbiota in dextran sulfate sodium-treated mice.
        Food & Function. 2020; 11: 1063-1073
        • Liu Z.
        • DeSantis T.Z.
        • Andersen G.L.
        • Knight R.
        Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers.
        Nucleic Acids Research. 2008; 36: e120
        • Liu Z.
        • Lozupone C.
        • Hamady M.
        • Bushman F.D.
        • Knight R.
        Short pyrosequencing reads suffice for accurate microbial community analysis.
        Nucleic Acids Research. 2007; 35: e120
        • Louis P.
        • Flint H.J.
        Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine.
        FEMS Microbiology Letters. 2009; 294: 1-8
        • Lundberg J.O.
        • Weitzberg E.
        • Cole J.A.
        • Benjamin N.
        Nitrate, bacteria and human health.
        Nature Reviews Microbiology. 2004; 2: 593-602
        • Mandal S.
        • Van Treuren W.
        • White R.A.
        • Eggesbo M.
        • Knight R.
        • Peddada S.D.
        Analysis of composition of microbiomes: A novel method for studying microbial composition.
        Microbial Ecology in Health and Disease. 2015; 26: 27663
        • Manor O.
        • Dai C.L.
        • Kornilov S.A.
        • Smith B.
        • Price N.D.
        • Lovejoy J.C.
        • Gibbons S.M.
        • Magis A.T.
        Health and disease markers correlate with gut microbiome composition across thousands of people.
        Nature Communications. 2020; 11: 5206
        • Martami F.
        • Togha M.
        • Seifishahpar M.
        • Ghorbani Z.
        • Ansari H.
        • Karimi T.
        • Jahromi S.R.
        The effects of a multispecies probiotic supplement on inflammatory markers and episodic and chronic migraine characteristics: A randomized double-blind controlled trial.
        Cephalalgia. 2019; 39: 841-853
        • McDonald D.
        • Hyde E.
        • Debelius J.W.
        • Morton J.T.
        • Gonzalez A.
        • Ackermann G.
        • Aksenov A.A.
        • Behsaz B.
        • Brennan C.
        • Chen Y.
        • Goldasich L.D.
        • Dorrestein P.C.
        • Dunn R.R.
        • Fahimipour A.K.
        • Gaffney J.
        • Gilbert J.A.
        • Gogul G.
        • Green J.L.
        • Hugenholtz P.
        • Humphrey G.
        • Huttenhower C.
        • Jackson M.A.
        • Janssen S.
        • Jeste D.V.
        • Jiang L.
        • Kelley S.T.
        • Knights D.
        • Kosciolek T.
        • Ladau J.
        • Leach J.
        • Marotz C.
        • Meleshko D.
        • Melnik A.V.
        • Metcalf J.L.
        • Mohimani H.
        • Montassier E.
        • Navas-Molina J.
        • Nguyen T.T.
        • Peddada S.
        • Pevzner P.
        • Pollard K.S.
        • Rahnavard G.
        • Robbins-Pianka A.
        • Sangwan N.
        • Shorenstein J.
        • Smarr L.
        • Song S.J.
        • Spector T.
        • Swafford A.D.
        • Thackray V.G.
        • Thompson L.R.
        • Tripathi A.
        • Vázquez-Baeza Y.
        • Vrbanac A.
        • Wischmeyer P.
        • Wolfe E.
        • Zhu Q.
        • Knight R.
        • Greene C.S.
        • Mann A.E.
        • Amir A.
        • Frazier A.
        • Martino C.
        • Lebrilla C.
        • Lozupone C.
        • Lewis C.M.
        • Raison C.
        • Zhang C.
        • Lauber C.L.
        • Warinner C.
        • Lowry C.A.
        • Callewaert C.
        • Bloss C.
        • Willner D.
        • Galzerani D.D.
        • Gonzalez D.J.
        • Mills D.A.
        • Chopra D.
        • Gevers D.
        • Berg-Lyons D.
        • Sears D.D.
        • Wendel D.
        • Lovelace E.
        • Pierce E.
        • TerAvest E.
        • Bolyen E.
        • Bushman F.D.
        • Wu G.D.
        • Church G.M.
        • Saxe G.
        • Holscher H.D.
        • Ugrina I.
        • German J.B.
        • Caporaso J.G.
        • Wozniak J.M.
        • Kerr J.
        • Ravel J.
        • Lewis J.D.
        • Suchodolski J.S.
        • Jansson J.K.
        • Hampton-Marcell J.T.
        • Bobe J.
        • Raes J.
        • Chase J.H.
        • Eisen J.A.
        • Monk J.
        • Clemente J.C.
        • Petrosino J.
        • Goodrich J.
        • Gauglitz J.
        • Jacobs J.
        • Zengler K.
        • Swanson K.S.
        • Lewis K.
        • Mayer K.
        • Bittinger K.
        • Dillon L.
        • Zaramela L.S.
        • Schriml L.M.
        • Dominguez-Bello M.G.
        • Jankowska M.M.
        • Blaser M.
        • Pirrung M.
        • Minson M.
        • Kurisu M.
        • Ajami N.
        • Gottel N.R.
        • Chia N.
        • Fierer N.
        • White O.
        • Cani P.D.
        • Gajer P.
        • Strandwitz P.
        • Kashyap P.
        • Dutton R.
        • Park R.S.
        • Xavier R.J.
        • Mills R.H.
        • Krajmalnik-Brown R.
        • Ley R.
        • Owens S.M.
        • Klemmer S.
        • Matamoros S.
        • Mirarab S.
        • Moorman S.
        • Holmes S.
        • Schwartz T.
        • Eshoo-Anton T.W.
        • Vigers T.
        • Pandey V.
        • Treuren W.V.
        • Fang X.
        • Xu Z.Z.
        • Jarmusch A.
        • Geier J.
        • Reeve N.
        • Silva R.
        • Kopylova E.
        • Nguyen D.
        • Sanders K.
        • Benitez R.A.S.
        • Heale A.C.
        • Abramson M.
        • Waldispühl J.
        • Butyaev A.
        • Drogaris C.
        • Nazarova E.
        • Ball M.
        • Gunderson B.
        American gut: An open platform for citizen science microbiome research.
        mSystems. 2018; 3 (e00031-e00018)
        • McInnes P.
        • Cutting M.
        NIH Human Microbiome Project – Core Microbiome Sampling Protocol A (HMP-A): Version 7.
        Manual of Procedures. Hum Microbiome Project. 2009; 11: 1-109
        • Morgan X.C.
        • Tickle T.L.
        • Sokol H.
        • Gevers D.
        • Devaney K.L.
        • Ward D.V.
        • Reyes J.A.
        • Shah S.A.
        • LeLeiko N.
        • Snapper S.B.
        • Bousvaros A.
        • Korzenik J.
        • Sands B.E.
        • Xavier R.J.
        • Huttenhower C.
        Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment.
        Genome Biology. 2012; 13: R79
        • Mosca A.
        • Leclerc M.
        • Hugot J.P.
        Gut microbiota diversity and human diseases: Should we reintroduce key predators in our ecosystem?.
        Frontiers in Microbiology. 2016; 7: 455
        • Nikolova V.L.
        • Hall M.R.B.
        • Hall L.J.
        • Cleare A.J.
        • Stone J.M.
        • Young A.H.
        Perturbations in gut microbiota composition in psychiatric disorders: A review and meta-analysis.
        JAMA Psychiatry. 2021; 78: 1343-1354
        • Pickard J.M.
        • Zeng M.Y.
        • Caruso R.
        • Núñez G.
        Gut microbiota: Role in pathogen colonization, immune responses, and inflammatory disease.
        Immunological Reviews. 2017; 279: 70-89
        • Rothner A.D.
        Migraine variants in children.
        Pediatr Annals. 2018; 47: e50-e54
        • Savage D.C.
        Microbial ecology of the gastrointestinal tract.
        Annual Review of Microbiology. 1977; 31: 107-133
        • Schaubeck M.
        • Clavel T.
        • Calasan J.
        • Lagkouvardos I.
        • Haange S.B.
        • Jehmlich N.
        • Basic M.
        • Dupont A.
        • Hornef M.
        • von Bergen M.
        • Bleich A.
        • Haller D.
        Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence.
        Gut. 2016; 65: 225-237
        • Schirmer M.
        • Smeekens S.P.
        • Vlamakis H.
        • Jaeger M.
        • Oosting M.
        • Franzosa E.A.
        • Ter Horst R.
        • Jansen T.
        • Jacobs L.
        • Bonder M.J.
        • Kurilshikov A.
        • Fu J.
        • Joosten L.A.B.
        • Zhernakova A.
        • Huttenhower C.
        • Wijmenga C.
        • Netea M.G.
        • Xavier R.J
        Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity.
        Cell. 2016; 167 (1125-1136.e8)
        • Simpson C.A.
        • Diaz-Arteche C.
        • Eliby D.
        • Schwartz O.S.
        • Simmons J.G.
        • Cowan C.S.M.
        The gut microbiota in anxiety and depression – A systematic review.
        Clinical Psychology Review. 2021; 83101943
        • Su J.
        • Zhou X.Y.
        • Zhang G.X.
        Association between Helicobacter pylori infection and migraine: A meta-analysis.
        World Journal of Gastroenterology. 2014; 20: 14965-14972
        • Tang Y.
        • Liu S.
        • Shu H.
        • Yanagisawa L.
        • Tao F.
        Gut microbiota dysbiosis enhances migraine-like pain via TNFα upregulation.
        Molecular Neurobiology. 2020; 57: 461-468
        • Tap J.
        • Mondot S.
        • Levenez F.
        • Pelletier E.
        • Caron C.
        • Furet J.P.
        • Ugarte E.
        • Muñoz-Tamayo R.
        • Paslier D.L.
        • Nalin R.
        • Dore J.
        • Leclerc M.
        Towards the human intestinal microbiota phylogenetic core.
        Environmental Microbiology. 2009; 11: 2574-2584
        • Teleanu R.I.
        • Vladacenco O.
        • Teleanu D.M.
        • Epure D.A.
        Treatment of pediatric migraine: A review.
        Maedica. 2016; 11: 136-143
        • Vázquez-Baeza Y.
        • Pirrung M.
        • Gonzalez A.
        • Knight R.
        EMPeror: A tool for visualizing high-throughput microbial community data.
        GigaScience. 2013; 2: 16
        • Wang J.
        • Lang T.
        • Shen J.
        • Dai J.
        • Tian L.
        • Wang X.
        Core gut bacteria analysis of healthy mice.
        Frontiers in Microbiology. 2019; 10: 887
        • Waters J.L.
        • Ley R.E.
        The human gut bacteria Christensenellaceae are widespread, heritable, and associated with health.
        BMC Biology. 2019; 17: 83
        • Wen L.
        • Duffy A.
        Factors influencing the gut microbiota, inflammation, and type 2 diabetes.
        Journal of Nutrition. 2017; 147: 1468S-1475S
        • Wilson M.
        Bacteriology of humans: an ecological perspective.
        Wiley-Blackwell, Hoboken, NJ2008
        • Youssef P.E.
        • Mack K.J.
        Episodic and chronic migraine in children.
        Developmental Medicine and Child Neurology. 2020; 62: 34-41
        • Zakrzewski M.
        • Simms L.A.
        • Brown A.
        • Appleyard M.
        • Irwin J.
        • Waddell N.
        • Radford-Smith G.L.
        IL23R-protective coding variant promotes beneficial bacteria and diversity in the ileal microbiome in healthy individuals without inflammatory bowel disease.
        Journal of Crohn's & Colitis. 2019; 13: 451-461